Detailed information of SNP:
|
SNP ID:
sf0223631440(Gbrowse)
Chromosome: chr02 Position: 23631440 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 52.26% | 47.74% |
| All Indica | 796 | 29.90% | 70.10% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 15.78% | 84.22% |
| Indica II | 213 | 46.01% | 53.99% |
| Indica Intermediate | 209 | 38.76% | 61.24% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223631440 | C->T | INTERGENIC | None |