Detailed information of SNP:
|
SNP ID:
sf0223631607(Gbrowse)
Chromosome: chr02 Position: 23631607 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 60.85% | 39.15% |
| All Indica | 795 | 88.68% | 11.32% |
| All Japonica | 497 | 9.86% | 90.14% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 207 | 69.08% | 30.92% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223631607 | T->C | INTERGENIC | None |