Detailed information of SNP:
|
SNP ID:
sf0223631971(Gbrowse)
Chromosome: chr02 Position: 23631971 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 54.51% | 45.49% |
| All Indica | 798 | 29.07% | 70.93% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 13.33% | 86.67% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 210 | 38.10% | 61.90% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223631971 | C->T | INTERGENIC | None |