Detailed information of SNP:
|
SNP ID:
sf0223632396(Gbrowse)
Chromosome: chr02 Position: 23632396 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.37% | 11.63% |
| All Indica | 799 | 83.60% | 16.40% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 70.15% | 29.85% |
| Indica I | 375 | 93.33% | 6.67% |
| Indica II | 213 | 55.87% | 44.13% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223632396 | C->T | INTERGENIC | None |