Detailed information of SNP:
|
SNP ID:
sf0223633102(Gbrowse)
Chromosome: chr02 Position: 23633102 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 70.41% | 29.59% |
| All Indica | 788 | 70.69% | 29.31% |
| All Japonica | 469 | 70.15% | 29.85% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 372 | 66.67% | 33.33% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 204 | 53.43% | 46.57% |
| Temperate Japonica | 316 | 82.59% | 17.41% |
| Tropical Japonica | 92 | 47.83% | 52.17% |
| Japonica Intermediate | 61 | 39.34% | 60.66% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223633102 | C->T | INTERGENIC | None |