Detailed information of SNP:
|
SNP ID:
sf0223633285(Gbrowse)
Chromosome: chr02 Position: 23633285 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1324 | 58.08% | 41.92% |
| All Indica | 736 | 87.77% | 12.23% |
| All Japonica | 494 | 9.31% | 90.69% |
| Aus | 48 | 100.00% | 0.00% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 161 | 98.14% | 1.86% |
| Indica Intermediate | 201 | 68.16% | 31.84% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 92 | 43.48% | 56.52% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 4 | 75.00% | 25.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223633285 | T->C | INTERGENIC | None |