Detailed information of SNP:
|
SNP ID:
sf0223638290(Gbrowse)
Chromosome: chr02 Position: 23638290 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1395 | 85.66% | 14.34% |
| All Indica | 799 | 80.73% | 19.27% |
| All Japonica | 474 | 96.84% | 3.16% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 86.13% | 13.87% |
| Indica II | 213 | 73.24% | 26.76% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 71 | 87.32% | 12.68% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223638290 | T->G | LOC_Os02g39140(LOC_Os02g39140.2) | INTRON |
| sf0223638290 | T->G | LOC_Os02g39140(LOC_Os02g39140.1) | INTRON |