Detailed information of SNP:
|
SNP ID:
sf0223646877(Gbrowse)
Chromosome: chr02 Position: 23646877 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 88.58% | 11.42% |
| All Indica | 799 | 84.86% | 15.14% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 86.40% | 13.60% |
| Indica II | 213 | 84.51% | 15.49% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223646877 | G->C | LOC_Os02g39155(LOC_Os02g39155.1) | Non-Synonymous SNP |