Detailed information of SNP:
|
SNP ID:
sf0223655889(Gbrowse)
Chromosome: chr02 Position: 23655889 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 86.57% | 13.43% |
| All Indica | 795 | 84.78% | 15.22% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 209 | 55.98% | 44.02% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223655889 | C->T | INTERGENIC | None |