Detailed information of SNP:
|
SNP ID:
sf0223657876(Gbrowse)
Chromosome: chr02 Position: 23657876 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1330 | 63.68% | 36.32% |
| All Indica | 778 | 81.23% | 18.77% |
| All Japonica | 431 | 39.91% | 60.09% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 369 | 92.41% | 7.59% |
| Indica II | 212 | 56.13% | 43.87% |
| Indica Intermediate | 197 | 87.31% | 12.69% |
| Temperate Japonica | 282 | 39.36% | 60.64% |
| Tropical Japonica | 88 | 40.91% | 59.09% |
| Japonica Intermediate | 61 | 40.98% | 59.02% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223657876 | T->C | LOC_Os02g39170(LOC_Os02g39170.1) | INTRON |