Detailed information of SNP:
|
SNP ID:
sf0223657877(Gbrowse)
Chromosome: chr02 Position: 23657877 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 83.65% | 16.35% |
| All Indica | 787 | 83.86% | 16.14% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 23.88% | 76.12% |
| Indica I | 368 | 95.11% | 4.89% |
| Indica II | 212 | 57.08% | 42.92% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223657877 | T->G | LOC_Os02g39170(LOC_Os02g39170.1) | INTRON |