Detailed information of SNP:
|
SNP ID:
sf0223662544(Gbrowse)
Chromosome: chr02 Position: 23662544 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.11% | 13.89% |
| All Indica | 798 | 85.59% | 14.41% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 211 | 94.79% | 5.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223662544 | G->A | INTERGENIC | None |