Detailed information of SNP:
|
SNP ID:
sf0223662909(Gbrowse)
Chromosome: chr02 Position: 23662909 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1312 | 77.44% | 22.56% |
| All Indica | 719 | 63.84% | 36.16% |
| All Japonica | 473 | 95.35% | 4.65% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 326 | 50.92% | 49.08% |
| Indica II | 197 | 75.13% | 24.87% |
| Indica Intermediate | 196 | 73.98% | 26.02% |
| Temperate Japonica | 317 | 96.53% | 3.47% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223662909 | G->A | INTERGENIC | None |