Detailed information of SNP:
|
SNP ID:
sf0223668967(Gbrowse)
Chromosome: chr02 Position: 23668967 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 83.54% | 16.46% |
| All Indica | 791 | 74.34% | 25.66% |
| All Japonica | 479 | 97.91% | 2.09% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 370 | 71.89% | 28.11% |
| Indica II | 211 | 81.04% | 18.96% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 321 | 97.20% | 2.80% |
| Tropical Japonica | 92 | 98.91% | 1.09% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223668967 | C->T | LOC_Os02g39190(LOC_Os02g39190.1) | INTRON |