Detailed information of SNP:
|
SNP ID:
sf0223681451(Gbrowse)
Chromosome: chr02 Position: 23681451 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 85.91% | 14.09% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223681451 | G->A | INTERGENIC | None |