Detailed information of SNP:
|
SNP ID:
sf0223682260(Gbrowse)
Chromosome: chr02 Position: 23682260 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1336 | 95.21% | 4.79% |
| All Indica | 727 | 91.47% | 8.53% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 335 | 86.87% | 13.13% |
| Indica II | 199 | 97.49% | 2.51% |
| Indica Intermediate | 193 | 93.26% | 6.74% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 97.30% | 2.70% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223682260 | C->T | INTERGENIC | None |