Detailed information of SNP:
|
SNP ID:
sf0223682261(Gbrowse)
Chromosome: chr02 Position: 23682261 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 81.70% | 18.30% |
| All Indica | 792 | 81.06% | 18.94% |
| All Japonica | 497 | 92.35% | 7.65% |
| Aus | 64 | 18.75% | 81.25% |
| Indica I | 374 | 91.44% | 8.56% |
| Indica II | 208 | 53.85% | 46.15% |
| Indica Intermediate | 210 | 89.52% | 10.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 37 | 91.89% | 8.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223682261 | C->T | INTERGENIC | None |