Detailed information of SNP:
|
SNP ID:
sf0223686969(Gbrowse)
Chromosome: chr02 Position: 23686969 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 85.40% | 14.60% |
| All Indica | 798 | 82.83% | 17.17% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 212 | 53.77% | 46.23% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223686969 | G->A | LOC_Os02g39220(LOC_Os02g39220.1) | INTRON |