Detailed information of SNP:
|
SNP ID:
sf0223690083(Gbrowse)
Chromosome: chr02 Position: 23690083 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 81.65% | 18.35% |
| All Indica | 797 | 80.68% | 19.32% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 374 | 90.64% | 9.36% |
| Indica II | 212 | 54.72% | 45.28% |
| Indica Intermediate | 211 | 89.10% | 10.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223690083 | C->T | LOC_Os02g39220(LOC_Os02g39220.1) | INTRON |