Detailed information of SNP:
|
SNP ID:
sf0223693346(Gbrowse)
Chromosome: chr02 Position: 23693346 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 81.47% | 18.53% |
| All Indica | 799 | 80.35% | 19.65% |
| All Japonica | 497 | 92.56% | 7.44% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 53.52% | 46.48% |
| Indica Intermediate | 211 | 88.63% | 11.37% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223693346 | G->A | INTERGENIC | None |