Detailed information of SNP:
|
SNP ID:
sf0223696092(Gbrowse)
Chromosome: chr02 Position: 23696092 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1335 | 61.05% | 38.95% |
| All Indica | 774 | 49.87% | 50.13% |
| All Japonica | 440 | 74.55% | 25.45% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 363 | 39.94% | 60.06% |
| Indica II | 209 | 67.94% | 32.06% |
| Indica Intermediate | 202 | 49.01% | 50.99% |
| Temperate Japonica | 292 | 81.51% | 18.49% |
| Tropical Japonica | 89 | 60.67% | 39.33% |
| Japonica Intermediate | 59 | 61.02% | 38.98% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223696092 | C->T | INTERGENIC | None |