Detailed information of SNP:
|
SNP ID:
sf0223702304(Gbrowse)
Chromosome: chr02 Position: 23702304 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 84.57% | 15.43% |
| All Indica | 799 | 74.47% | 25.53% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 72.27% | 27.73% |
| Indica II | 213 | 81.22% | 18.78% |
| Indica Intermediate | 211 | 71.56% | 28.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223702304 | G->A | LOC_Os02g39250(LOC_Os02g39250.1) | Synonymous |