Detailed information of SNP:
|
SNP ID:
sf0223705024(Gbrowse)
Chromosome: chr02 Position: 23705024 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1239 | 77.16% | 22.84% |
| All Indica | 632 | 72.15% | 27.85% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 58 | 8.62% | 91.38% |
| Indica I | 294 | 83.33% | 16.67% |
| Indica II | 181 | 44.20% | 55.80% |
| Indica Intermediate | 157 | 83.44% | 16.56% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 62.37% | 37.63% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223705024 | A->G | LOC_Os02g39260(LOC_Os02g39260.1) | UTR_5_PRIME |