Detailed information of SNP:
|
SNP ID:
sf0223705878(Gbrowse)
Chromosome: chr02 Position: 23705878 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 83.76% | 16.24% |
| All Indica | 798 | 81.70% | 18.30% |
| All Japonica | 497 | 92.76% | 7.24% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 91.18% | 8.82% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 211 | 91.47% | 8.53% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223705878 | G->T | LOC_Os02g39260(LOC_Os02g39260.1) | Non-Synonymous SNP |