Detailed information of SNP:
|
SNP ID:
sf0223710867(Gbrowse)
Chromosome: chr02 Position: 23710867 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 78.83% | 21.17% |
| All Indica | 798 | 67.17% | 32.83% |
| All Japonica | 496 | 99.40% | 0.60% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 59.73% | 40.27% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 210 | 68.57% | 31.43% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223710867 | C->A | INTERGENIC | None |