Detailed information of SNP:
|
SNP ID:
sf0223714026(Gbrowse)
Chromosome: chr02 Position: 23714026 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 80.94% | 19.06% |
| All Indica | 791 | 81.04% | 18.96% |
| All Japonica | 496 | 90.73% | 9.27% |
| Aus | 66 | 22.73% | 77.27% |
| Indica I | 370 | 96.76% | 3.24% |
| Indica II | 212 | 45.28% | 54.72% |
| Indica Intermediate | 209 | 89.47% | 10.53% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 63.83% | 36.17% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223714026 | T->C | INTERGENIC | None |