Detailed information of SNP:
|
SNP ID:
sf0223714253(Gbrowse)
Chromosome: chr02 Position: 23714253 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1407 | 75.91% | 24.09% |
| All Indica | 791 | 66.50% | 33.50% |
| All Japonica | 493 | 93.71% | 6.29% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 369 | 60.16% | 39.84% |
| Indica II | 212 | 75.00% | 25.00% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 66.67% | 33.33% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223714253 | T->C | INTERGENIC | None |