Detailed information of SNP:
|
SNP ID:
sf0223714301(Gbrowse)
Chromosome: chr02 Position: 23714301 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 81.61% | 18.39% |
| All Indica | 794 | 69.27% | 30.73% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 373 | 61.66% | 38.34% |
| Indica II | 212 | 78.30% | 21.70% |
| Indica Intermediate | 209 | 73.68% | 26.32% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223714301 | C->T | INTERGENIC | None |