Detailed information of SNP:
|
SNP ID:
sf0223714801(Gbrowse)
Chromosome: chr02 Position: 23714801 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 85.12% | 14.88% |
| All Indica | 790 | 84.30% | 15.70% |
| All Japonica | 497 | 93.16% | 6.84% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 368 | 99.46% | 0.54% |
| Indica II | 211 | 49.29% | 50.71% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 65.96% | 34.04% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223714801 | C->T | LOC_Os02g39280(LOC_Os02g39280.1) | Synonymous |