Detailed information of SNP:
|
SNP ID:
sf0223715920(Gbrowse)
Chromosome: chr02 Position: 23715920 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 87.44% | 12.56% |
| All Indica | 798 | 84.09% | 15.91% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 212 | 50.94% | 49.06% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223715920 | C->A | LOC_Os02g39280(LOC_Os02g39280.1) | INTRON |