Detailed information of SNP:
|
SNP ID:
sf0223718104(Gbrowse)
Chromosome: chr02 Position: 23718104 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 89.57% | 10.43% |
| All Indica | 792 | 87.25% | 12.75% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 206 | 57.28% | 42.72% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223718104 | C->T | LOC_Os02g39280(LOC_Os02g39280.1) | INTRON |