Detailed information of SNP:
|
SNP ID:
sf0223722097(Gbrowse)
Chromosome: chr02 Position: 23722097 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1372 | 89.58% | 10.42% |
| All Indica | 792 | 99.12% | 0.88% |
| All Japonica | 458 | 71.18% | 28.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.39% | 1.61% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 99.52% | 0.48% |
| Temperate Japonica | 306 | 61.44% | 38.56% |
| Tropical Japonica | 88 | 98.86% | 1.14% |
| Japonica Intermediate | 64 | 79.69% | 20.31% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223722097 | C->T | LOC_Os02g39290(LOC_Os02g39290.1) | Non-Synonymous SNP |
| sf0223722097 | C->T | LOC_Os02g39290(LOC_Os02g39290.2) | INTRON |