Detailed information of SNP:



SNP ID: sf0223724851(Gbrowse)

Chromosome: chr02

Position: 23724851
Major allele: G

Minor allele: C

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of C(minor allele)
All1413 87.83% 12.17%
All Indica794 84.76% 15.24%
All Japonica497 99.40% 0.60%
Aus67 50.75% 49.25%
Indica I372 99.19% 0.81%
Indica II211 50.71% 49.29%
Indica Intermediate211 93.36% 6.64%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 21.43% 78.57%
Intermediate41 90.24% 9.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0223724851 G->C LOC_Os02g39300(LOC_Os02g39300.1) INTRON