Detailed information of SNP:
|
SNP ID:
sf0223730787(Gbrowse)
Chromosome: chr02 Position: 23730787 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 87.91% | 12.09% |
| All Indica | 794 | 84.76% | 15.24% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 372 | 99.19% | 0.81% |
| Indica II | 211 | 51.18% | 48.82% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223730787 | A->G | INTERGENIC | None |