Detailed information of SNP:
|
SNP ID:
sf0223731123(Gbrowse)
Chromosome: chr02 Position: 23731123 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 88.22% | 11.78% |
| All Indica | 790 | 84.94% | 15.06% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 369 | 99.46% | 0.54% |
| Indica II | 211 | 52.13% | 47.87% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223731123 | G->A | INTERGENIC | None |