Detailed information of SNP:
|
SNP ID:
sf0223731143(Gbrowse)
Chromosome: chr02 Position: 23731143 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 76.54% | 23.46% |
| All Indica | 796 | 66.83% | 33.17% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 374 | 59.36% | 40.64% |
| Indica II | 212 | 75.47% | 24.53% |
| Indica Intermediate | 210 | 71.43% | 28.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223731143 | C->G | INTERGENIC | None |