Detailed information of SNP:
|
SNP ID:
sf0223735154(Gbrowse)
Chromosome: chr02 Position: 23735154 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 99.08% | 0.92% |
| All Indica | 794 | 99.87% | 0.13% |
| All Japonica | 492 | 97.56% | 2.44% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 331 | 96.37% | 3.63% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223735154 | C->T | INTERGENIC | None |