Detailed information of SNP:
|
SNP ID:
sf0223741404(Gbrowse)
Chromosome: chr02 Position: 23741404 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 77.12% | 22.88% |
| All Indica | 794 | 69.90% | 30.10% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 371 | 81.13% | 18.87% |
| Indica II | 212 | 43.87% | 56.13% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 78.49% | 21.51% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223741404 | A->C | LOC_Os02g39340(LOC_Os02g39340.2) | INTRON |
| sf0223741404 | A->C | LOC_Os02g39340(LOC_Os02g39340.1) | INTRON |