Detailed information of SNP:
|
SNP ID:
sf0223742085(Gbrowse)
Chromosome: chr02 Position: 23742085 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 76.97% | 23.03% |
| All Indica | 792 | 69.70% | 30.30% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 371 | 80.86% | 19.14% |
| Indica II | 211 | 43.60% | 56.40% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223742085 | A->G | LOC_Os02g39340(LOC_Os02g39340.1) | INTRON |