Detailed information of SNP:
|
SNP ID:
sf0223747648(Gbrowse)
Chromosome: chr02 Position: 23747648 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 88.21% | 11.79% |
| All Indica | 797 | 85.19% | 14.81% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223747648 | C->T | INTERGENIC | None |