Detailed information of SNP:
|
SNP ID:
sf0223749236(Gbrowse)
Chromosome: chr02 Position: 23749236 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 89.09% | 10.91% |
| All Indica | 794 | 86.27% | 13.73% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 55.38% | 44.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 208 | 54.33% | 45.67% |
| Indica Intermediate | 211 | 93.36% | 6.64% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223749236 | G->A | INTERGENIC | None |