Detailed information of SNP:
|
SNP ID:
sf0223763294(Gbrowse)
Chromosome: chr02 Position: 23763294 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 88.94% | 11.06% |
| All Indica | 793 | 86.25% | 13.75% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 65 | 49.23% | 50.77% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 57.08% | 42.92% |
| Indica Intermediate | 207 | 91.79% | 8.21% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223763294 | C->T | LOC_Os02g39384(LOC_Os02g39384.1) | UTR_5_PRIME |