Detailed information of SNP:
|
SNP ID:
sf0223805352(Gbrowse)
Chromosome: chr02 Position: 23805352 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 88.30% | 11.70% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 68.53% | 31.47% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 91.00% | 9.00% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223805352 | C->T | LOC_Os02g39470(LOC_Os02g39470.1) | INTRON |