Detailed information of SNP:
|
SNP ID:
sf0223812158(Gbrowse)
Chromosome: chr02 Position: 23812158 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 88.22% | 11.78% |
| All Indica | 798 | 85.21% | 14.79% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 51.64% | 48.36% |
| Indica Intermediate | 210 | 94.29% | 5.71% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223812158 | C->T | LOC_Os02g39470(LOC_Os02g39470.1) | INTRON |