Detailed information of SNP:
|
SNP ID:
sf0223814547(Gbrowse)
Chromosome: chr02 Position: 23814547 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 77.57% | 22.43% |
| All Indica | 798 | 67.67% | 32.33% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 81.55% | 18.45% |
| Indica II | 213 | 48.83% | 51.17% |
| Indica Intermediate | 211 | 62.09% | 37.91% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223814547 | C->T | INTERGENIC | None |