Detailed information of SNP:
|
SNP ID:
sf0223819766(Gbrowse)
Chromosome: chr02 Position: 23819766 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 77.73% | 22.27% |
| All Indica | 799 | 69.71% | 30.29% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 19.40% | 80.60% |
| Indica I | 375 | 82.40% | 17.60% |
| Indica II | 213 | 50.70% | 49.30% |
| Indica Intermediate | 211 | 66.35% | 33.65% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223819766 | C->A | LOC_Os02g39480(LOC_Os02g39480.1) | INTRON |