Detailed information of SNP:



SNP ID: sf0223828247(Gbrowse)

Chromosome: chr02

Position: 23828247
Major allele: T

Minor allele: G

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1419 88.87% 11.13%
All Indica799 87.61% 12.39%
All Japonica497 99.40% 0.60%
Aus67 37.31% 62.69%
Indica I375 100.00% 0.00%
Indica II213 58.69% 41.31%
Indica Intermediate211 94.79% 5.21%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 97.87% 2.13%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 0.00% 100.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0223828247 T->G LOC_Os02g39490(LOC_Os02g39490.1) INTRON