Detailed information of SNP:
|
SNP ID:
sf0223843607(Gbrowse)
Chromosome: chr02 Position: 23843607 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 86.86% | 13.14% |
| All Indica | 795 | 78.62% | 21.38% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 82.35% | 17.65% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 208 | 56.73% | 43.27% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223843607 | A->T | INTERGENIC | None |