Detailed information of SNP:
|
SNP ID:
sf0223847198(Gbrowse)
Chromosome: chr02 Position: 23847198 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 84.63% | 15.37% |
| All Indica | 799 | 77.35% | 22.65% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 81.33% | 18.67% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 54.03% | 45.97% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223847198 | G->A | LOC_Os02g39520(LOC_Os02g39520.2) | Non-Synonymous SNP |
| sf0223847198 | G->A | LOC_Os02g39520(LOC_Os02g39520.1) | Non-Synonymous SNP |