Detailed information of SNP:
|
SNP ID:
sf0223853021(Gbrowse)
Chromosome: chr02 Position: 23853021 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 73.41% | 26.59% |
| All Indica | 798 | 58.02% | 41.98% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 53.33% | 46.67% |
| Indica II | 213 | 52.11% | 47.89% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0223853021 | G->A | INTERGENIC | None |